MulCyber

NGSpipelines

De NGS Pipelines Wiki.

(Redirigé depuis Accueil)

Sommaire

Overview

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on ... The software package is based on the jflow workflow engine and the biomart query API.

File:architecture.png

Supported applications

  • RNA-seq denovo - A workflow specialized to analyse data produced by a RNA-seq protocole on species without any reference genomes.
  • sRNA-seq - A workflow specialized to analyse data produced by a sRNA-seq protocole.

Demo & Screenshots

A running version is available here where you can browse a demonstration project.

Documentation

Downloads

You can find a tarball of different version of ngspipelines and its applications here.

Announcing ...

  • ngspipelines v.1.0 - Here is the first packaged version of the tool.
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