Remarques sur les révisions

Nom de version : Carthagene1.1withActiveTCLandNoLKH

Notes

A general version which everybody can use. Unix (Linux/Solaris) installation To install CarthaGene on Unix systems, you must decide where will CarthaGene and ActiveTcl be installed. In the rest of this page, we assume that you will install them in your home directory ~/. 1. put the downloaded distribution file carthagene1.0.tar.gz in the directory chosen for installation: % mv carthagene1.0.tar.gz ~/ 2. Unpack the CarthaGene distribution: % gunzip carthagene1.0.tar.gz % tar xvf carthagene1.0.tar This will create a carthagene1.0 directory. Enter it. % cd carthagene1.0 3. Unpack ActiveTcl8.4.2.0-*-*.tar % tar xvf ActiveTcl8.4.2.0-*-*.tar This will create a ActiveTcl8.4.2.0-*-* directory. 4. In this directory, execute install.sh to install ActiveTcl. % ./install.sh When you are requested to specify the installation directory, enter ~/ActiveTcl. Just press next for the following questions. 5. You must then modify your shell PATH variable to indicate where Tcl executables and CarthaGene executables are. 1. For a csh or compatible shell (like tcsh) type: % setenv PATH "~/ActiveTcl/bin:~/carthagene1.0/gui:~/carthagene1.0/script:$PATH" Edit your shell startup file (this file is ~/.cshrc or .tcshrc for tcsh) and insert the very same line at the end of it. 2. for a sh or similar shell (like bash) type: % PATH="~/ActiveTcl/bin:~/carthagene1.0/gui:~/carthagene1.0/script:$PATH" % export PATH Edit your shell startup file (this file is called ~/.profile or .bach_profile or .login) and insert the very same lines at the end of it. 6. Go in the ~/carthagene1.0 directory and run the Tcl script installLinux.tcl in it to copy the configuration files from this directory to your home directory. % tclsh installLinux.tcl 7. The CarthaGene shell and graphical user interfaces are now ready to use from your environment. To launch the graphical interface type: % CGW.tcl To launch the shell interface, just type: % tclsh 8. you can now delete the large ActiveTcl8.4.2.0-*-*.tar file in the ~/carthagene1.0 directory. % rm ~/carthagene1.0/*.tar If the GUI doesn't start, check the contents of the ~/.cgwlog file residing at your home directory for error messages. If you are a system administrator and want to provide a system-wide installation available for all users, just do the very same process as the root user but using eg. /usr/local instead of ~/. You must also modify the sytem-wide startup files to provide consistent shell PATH variables to the users. WARNING: you must check that the ActiveTcl files appear BEFORE any other possible existing Tcl installation in the PATH

Journaux

This beta release includes new code to handle advanced Backcross data (by Clare Nelson, Kansas Univ.) and Markov Chain Monte Carlo code for estimation of RH map local reliability (by B. Servin and S. de Givry, INRA).

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